| Code | Description |
| N89.5 | Stricture and atresia of vagina |
| Q03.1 | Atresia of foramina of Magendie and Luschka |
| Q16.1 | Congenital absence, atresia and stricture of auditory canal (external) |
| Q22.0 | Pulmonary valve atresia |
| Q25.29 | Other atresia of aorta |
| Q25.5 | Atresia of pulmonary artery |
| Q30.0 | Choanal atresia |
| Q39.0 | Atresia of esophagus without fistula |
| Q39.1 | Atresia of esophagus with tracheo-esophageal fistula |
| Q39.2 | Congenital tracheo-esophageal fistula without atresia |
| Q41.0 | Congenital absence, atresia and stenosis of duodenum |
| Q41.1 | Congenital absence, atresia and stenosis of jejunum |
| Q41.2 | Congenital absence, atresia and stenosis of ileum |
| Q41.8 | Congenital absence, atresia and stenosis of other specified parts of small intestine |
| Q41.9 | Congenital absence, atresia and stenosis of small intestine, part unspecified |
| Q42.0 | Congenital absence, atresia and stenosis of rectum with fistula |
| Q42.1 | Congenital absence, atresia and stenosis of rectum without fistula |
| Q42.2 | Congenital absence, atresia and stenosis of anus with fistula |
| Q42.3 | Congenital absence, atresia and stenosis of anus without fistula |
| Q42.8 | Congenital absence, atresia and stenosis of other parts of large intestine |
| Q42.9 | Congenital absence, atresia and stenosis of large intestine, part unspecified |
| Q44.2 | Atresia of bile ducts |
| Q55.3 | Atresia of vas deferens |
| Q64.39 | Other atresia and stenosis of urethra and bladder neck |